Protein–RNA interactions for Protein: Q9BSQ5

CCM2, Cerebral cavernous malformations 2 protein, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2Q9BSQ5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 AC246785.2-201ENST00000432512 513 ntBASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 MIR3180-1-201ENST00000580374 94 ntBASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 MIR3180-3-201ENST00000584616 94 ntBASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 AL353801.3-201ENST00000609898 542 ntBASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 AL133373.2-201ENST00000623187 2828 ntBASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCM2Q9BSQ5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 AL845331.1-201ENST00000424978 1190 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 SLC25A6P5-201ENST00000435663 894 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 TPSP2-201ENST00000561760 610 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 AC092119.3-201ENST00000612618 583 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 AC090340.1-201ENST00000620778 4980 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCM2Q9BSQ5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 HCG4P8-203ENST00000443049 980 ntBASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 Z69720.1-201ENST00000601483 472 ntBASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 AC116407.2-201ENST00000613639 860 ntBASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
CCM2Q9BSQ5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms