Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HPS3Q969F9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.84■□□□□ 0.77
HPS3Q969F9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.84■□□□□ 0.77
HPS3Q969F9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HPS3Q969F9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HPS3Q969F9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.84■□□□□ 0.77
HPS3Q969F9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HPS3Q969F9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.84■□□□□ 0.77
HPS3Q969F9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.84■□□□□ 0.77
HPS3Q969F9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HPS3Q969F9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
HPS3Q969F9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
HPS3Q969F9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HPS3Q969F9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.83■□□□□ 0.77
HPS3Q969F9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
HPS3Q969F9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
HPS3Q969F9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
HPS3Q969F9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HPS3Q969F9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HPS3Q969F9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.83■□□□□ 0.77
HPS3Q969F9 AC009154.2-201ENST00000621177 724 ntBASIC19.83■□□□□ 0.77
HPS3Q969F9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.83■□□□□ 0.76
HPS3Q969F9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.83■□□□□ 0.76
HPS3Q969F9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.83■□□□□ 0.76
HPS3Q969F9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.83■□□□□ 0.76
HPS3Q969F9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.83■□□□□ 0.76
HPS3Q969F9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HPS3Q969F9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
HPS3Q969F9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 AC068472.1-201ENST00000474589 881 ntBASIC19.82■□□□□ 0.76
HPS3Q969F9 AC112698.1-201ENST00000510299 916 ntBASIC19.82■□□□□ 0.76
HPS3Q969F9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.82■□□□□ 0.76
HPS3Q969F9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.82■□□□□ 0.76
HPS3Q969F9 LINC01238-205ENST00000567549 1107 ntBASIC19.82■□□□□ 0.76
HPS3Q969F9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HPS3Q969F9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.82■□□□□ 0.76
HPS3Q969F9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
HPS3Q969F9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.81■□□□□ 0.76
HPS3Q969F9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 AC022898.2-201ENST00000616822 1312 ntBASIC19.81■□□□□ 0.76
HPS3Q969F9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HPS3Q969F9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.81■□□□□ 0.76
HPS3Q969F9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.81■□□□□ 0.76
HPS3Q969F9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.81■□□□□ 0.76
HPS3Q969F9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.81■□□□□ 0.76
HPS3Q969F9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.81■□□□□ 0.76
HPS3Q969F9 FAM86EP-206ENST00000510506 987 ntBASIC19.81■□□□□ 0.76
HPS3Q969F9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HPS3Q969F9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.81■□□□□ 0.76
HPS3Q969F9 AL136038.3-201ENST00000561909 1096 ntBASIC19.81■□□□□ 0.76
HPS3Q969F9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.81■□□□□ 0.76
HPS3Q969F9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms