Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 AC099791.1-201ENST00000416440 715 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 GRAMD4P2-201ENST00000423297 1097 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 SLC7A5P2-201ENST00000553010 536 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 AC142381.2-201ENST00000566120 298 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 MTMR9LP-203ENST00000426597 1545 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 MIR939-201ENST00000401314 82 ntBASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 AP001330.3-201ENST00000520123 633 ntBASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 IGHV3-19-201ENST00000521488 291 ntBASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 RBM17P2-201ENST00000616397 1405 ntBASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 AL355312.1-201ENST00000407115 2176 ntBASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLRN3Q8NCR9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CYP21A1P-202ENST00000354927 1481 ntBASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 AF213884.3-201ENST00000563833 479 ntBASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLRN3Q8NCR9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms