Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.57■□□□□ 0.24
RNF4P78317 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.57■□□□□ 0.24
RNF4P78317 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 AC138894.3-201ENST00000603787 634 ntBASIC16.57■□□□□ 0.24
RNF4P78317 AL138831.2-201ENST00000606564 490 ntBASIC16.57■□□□□ 0.24
RNF4P78317 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 AL354751.1-201ENST00000412768 1863 ntBASIC16.56■□□□□ 0.24
RNF4P78317 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 KRT8P47-201ENST00000604727 1398 ntBASIC16.56■□□□□ 0.24
RNF4P78317 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.56■□□□□ 0.24
RNF4P78317 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 KRT126P-201ENST00000549467 1181 ntBASIC16.56■□□□□ 0.24
RNF4P78317 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.56■□□□□ 0.24
RNF4P78317 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.56■□□□□ 0.24
RNF4P78317 AL121772.3-201ENST00000610840 674 ntBASIC16.56■□□□□ 0.24
RNF4P78317 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
RNF4P78317 AC138028.4-201ENST00000564984 1845 ntBASIC16.56■□□□□ 0.24
RNF4P78317 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
RNF4P78317 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RNF4P78317 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
RNF4P78317 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 TSPY19P-201ENST00000418461 509 ntBASIC16.55■□□□□ 0.24
RNF4P78317 POM121L3P-201ENST00000419331 1163 ntBASIC16.55■□□□□ 0.24
RNF4P78317 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.55■□□□□ 0.24
RNF4P78317 TSPY18P-201ENST00000441642 509 ntBASIC16.55■□□□□ 0.24
RNF4P78317 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.55■□□□□ 0.24
RNF4P78317 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 AC009533.2-201ENST00000543664 586 ntBASIC16.55■□□□□ 0.24
RNF4P78317 BNIP3P18-201ENST00000593976 575 ntBASIC16.55■□□□□ 0.24
RNF4P78317 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RNF4P78317 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.55■□□□□ 0.24
RNF4P78317 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.55■□□□□ 0.24
RNF4P78317 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
RNF4P78317 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms