Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.15■□□□□ 0.82
CIITAP33076 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CIITAP33076 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CIITAP33076 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
CIITAP33076 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
CIITAP33076 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
CIITAP33076 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CIITAP33076 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CIITAP33076 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.14■□□□□ 0.82
CIITAP33076 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CIITAP33076 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.14■□□□□ 0.81
CIITAP33076 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.14■□□□□ 0.81
CIITAP33076 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 AC111152.3-201ENST00000569699 673 ntBASIC20.14■□□□□ 0.81
CIITAP33076 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 IFNL4P1-201ENST00000607083 540 ntBASIC20.14■□□□□ 0.81
CIITAP33076 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.14■□□□□ 0.81
CIITAP33076 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
CIITAP33076 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CIITAP33076 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CIITAP33076 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.14■□□□□ 0.81
CIITAP33076 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CIITAP33076 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CIITAP33076 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.13■□□□□ 0.81
CIITAP33076 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.13■□□□□ 0.81
CIITAP33076 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.13■□□□□ 0.81
CIITAP33076 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.13■□□□□ 0.81
CIITAP33076 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.13■□□□□ 0.81
CIITAP33076 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.13■□□□□ 0.81
CIITAP33076 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CIITAP33076 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
CIITAP33076 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CIITAP33076 NOC2LP1-202ENST00000452600 2235 ntBASIC20.12■□□□□ 0.81
CIITAP33076 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
CIITAP33076 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CIITAP33076 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.12■□□□□ 0.81
CIITAP33076 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.12■□□□□ 0.81
CIITAP33076 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.12■□□□□ 0.81
CIITAP33076 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.12■□□□□ 0.81
CIITAP33076 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.12■□□□□ 0.81
CIITAP33076 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.12■□□□□ 0.81
CIITAP33076 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.12■□□□□ 0.81
CIITAP33076 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CIITAP33076 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CIITAP33076 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms