Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL5A1P20908 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL5A1P20908 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.06■□□□□ 0.32
COL5A1P20908 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A1P20908 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.06■□□□□ 0.32
COL5A1P20908 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
COL5A1P20908 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.06■□□□□ 0.32
COL5A1P20908 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A1P20908 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.06■□□□□ 0.32
COL5A1P20908 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
COL5A1P20908 AL138781.2-201ENST00000617896 1843 ntBASIC17.06■□□□□ 0.32
COL5A1P20908 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.06■□□□□ 0.32
COL5A1P20908 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.06■□□□□ 0.32
COL5A1P20908 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL5A1P20908 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 MRPL20P1-201ENST00000400819 433 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.05■□□□□ 0.32
COL5A1P20908 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL5A1P20908 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.05■□□□□ 0.32
COL5A1P20908 KRT18P28-201ENST00000453838 1332 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 GPR89P-201ENST00000407924 1495 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.05■□□□□ 0.32
COL5A1P20908 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
COL5A1P20908 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.05■□□□□ 0.32
COL5A1P20908 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.05■□□□□ 0.32
COL5A1P20908 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.05■□□□□ 0.32
COL5A1P20908 IGHV3-65-201ENST00000523210 341 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 MIR3197-201ENST00000582241 73 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A1P20908 AL078644.1-201ENST00000609881 752 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 AC010507.1-201ENST00000633895 436 ntBASIC17.05■□□□□ 0.32
COL5A1P20908 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A1P20908 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.05■□□□□ 0.32
COL5A1P20908 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL5A1P20908 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 PRSS29P-201ENST00000440800 595 ntBASIC17.04■□□□□ 0.32
COL5A1P20908 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL5A1P20908 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL5A1P20908 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A1P20908 AC132938.5-201ENST00000624980 1813 ntBASIC17.04■□□□□ 0.32
COL5A1P20908 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.04■□□□□ 0.32
COL5A1P20908 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A1P20908 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.04■□□□□ 0.32
COL5A1P20908 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.04■□□□□ 0.32
COL5A1P20908 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL5A1P20908 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.03■□□□□ 0.32
COL5A1P20908 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.03■□□□□ 0.32
COL5A1P20908 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms