Protein–RNA interactions for Protein: P13612

ITGA4, Integrin alpha-4, humanhuman

Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4P13612 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
ITGA4P13612 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.65■□□□□ 0.74
ITGA4P13612 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 AL031008.1-201ENST00000619963 541 ntBASIC19.65■□□□□ 0.74
ITGA4P13612 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 KRT8P10-201ENST00000450021 1447 ntBASIC19.65■□□□□ 0.74
ITGA4P13612 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
ITGA4P13612 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ITGA4P13612 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ITGA4P13612 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.64■□□□□ 0.74
ITGA4P13612 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.64■□□□□ 0.74
ITGA4P13612 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ITGA4P13612 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ITGA4P13612 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
ITGA4P13612 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
ITGA4P13612 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
ITGA4P13612 FDX1P1-201ENST00000449115 551 ntBASIC19.64■□□□□ 0.73
ITGA4P13612 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.64■□□□□ 0.73
ITGA4P13612 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.64■□□□□ 0.73
ITGA4P13612 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.64■□□□□ 0.73
ITGA4P13612 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.64■□□□□ 0.73
ITGA4P13612 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
ITGA4P13612 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.64■□□□□ 0.73
ITGA4P13612 BNIP3P18-201ENST00000593976 575 ntBASIC19.64■□□□□ 0.73
ITGA4P13612 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ITGA4P13612 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.64■□□□□ 0.73
ITGA4P13612 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ITGA4P13612 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ITGA4P13612 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.63■□□□□ 0.73
ITGA4P13612 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ITGA4P13612 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 AC079781.3-201ENST00000449110 356 ntBASIC19.63■□□□□ 0.73
ITGA4P13612 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.63■□□□□ 0.73
ITGA4P13612 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ITGA4P13612 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.63■□□□□ 0.73
ITGA4P13612 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ITGA4P13612 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.63■□□□□ 0.73
ITGA4P13612 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ITGA4P13612 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.62■□□□□ 0.73
ITGA4P13612 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 GMCL1P1-201ENST00000463439 1581 ntBASIC19.62■□□□□ 0.73
ITGA4P13612 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
ITGA4P13612 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ITGA4P13612 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.62■□□□□ 0.73
ITGA4P13612 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ITGA4P13612 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms