Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 NTF6B-201ENST00000591913 560 ntBASIC20.72■□□□□ 0.91
CTDNEP1O95476 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.72■□□□□ 0.91
CTDNEP1O95476 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CTDNEP1O95476 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.72■□□□□ 0.91
CTDNEP1O95476 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 HLA-J-201ENST00000462773 1622 ntBASIC20.71■□□□□ 0.91
CTDNEP1O95476 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CTDNEP1O95476 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CTDNEP1O95476 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CTDNEP1O95476 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 TSPY22P-201ENST00000427496 604 ntBASIC20.7■□□□□ 0.9
CTDNEP1O95476 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 FAM86EP-206ENST00000510506 987 ntBASIC20.7■□□□□ 0.9
CTDNEP1O95476 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 AC011498.5-201ENST00000592027 486 ntBASIC20.7■□□□□ 0.9
CTDNEP1O95476 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 AC116407.2-201ENST00000613639 860 ntBASIC20.7■□□□□ 0.9
CTDNEP1O95476 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CTDNEP1O95476 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CTDNEP1O95476 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AC096633.1-201ENST00000422446 749 ntBASIC20.69■□□□□ 0.9
CTDNEP1O95476 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AL049597.2-201ENST00000565575 961 ntBASIC20.69■□□□□ 0.9
CTDNEP1O95476 LINC01238-205ENST00000567549 1107 ntBASIC20.69■□□□□ 0.9
CTDNEP1O95476 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AL353801.3-201ENST00000609898 542 ntBASIC20.69■□□□□ 0.9
CTDNEP1O95476 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CTDNEP1O95476 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms