Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
SGCEO43556 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 RNF152P1-201ENST00000397754 604 ntBASIC15.87■□□□□ 0.13
SGCEO43556 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.87■□□□□ 0.13
SGCEO43556 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.87■□□□□ 0.13
SGCEO43556 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.87■□□□□ 0.13
SGCEO43556 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.87■□□□□ 0.13
SGCEO43556 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.87■□□□□ 0.13
SGCEO43556 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SGCEO43556 AL136038.4-201ENST00000603606 1261 ntBASIC15.87■□□□□ 0.13
SGCEO43556 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 NOC2LP2-201ENST00000407594 1944 ntBASIC15.87■□□□□ 0.13
SGCEO43556 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SGCEO43556 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SGCEO43556 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SGCEO43556 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 AK4P3-201ENST00000418260 669 ntBASIC15.86■□□□□ 0.13
SGCEO43556 SPDYE15P-201ENST00000424157 909 ntBASIC15.86■□□□□ 0.13
SGCEO43556 TSPY5P-201ENST00000426936 936 ntBASIC15.86■□□□□ 0.13
SGCEO43556 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 HOMER2P1-201ENST00000455653 964 ntBASIC15.86■□□□□ 0.13
SGCEO43556 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.86■□□□□ 0.13
SGCEO43556 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.86■□□□□ 0.13
SGCEO43556 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SGCEO43556 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.86■□□□□ 0.13
SGCEO43556 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.86■□□□□ 0.13
SGCEO43556 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SGCEO43556 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
SGCEO43556 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 AL391807.1-203ENST00000604392 2365 ntBASIC15.85■□□□□ 0.13
SGCEO43556 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.85■□□□□ 0.13
SGCEO43556 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SGCEO43556 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 FAM8A6P-201ENST00000407496 1135 ntBASIC15.85■□□□□ 0.13
SGCEO43556 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.85■□□□□ 0.13
SGCEO43556 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 AC024563.2-201ENST00000603282 481 ntBASIC15.85■□□□□ 0.13
SGCEO43556 AC006011.2-201ENST00000621313 1158 ntBASIC15.85■□□□□ 0.13
SGCEO43556 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SGCEO43556 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SGCEO43556 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms