Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHB3Q9Y5E6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDHB3Q9Y5E6 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
PCDHB3Q9Y5E6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 PVRIG2P-201ENST00000435460 978 ntBASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 BCL2-203ENST00000589955 5011 ntBASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PCDHB3Q9Y5E6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHB3Q9Y5E6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDHB3Q9Y5E6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 AL357033.4-201ENST00000617703 1807 ntBASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 KRT8P26-201ENST00000534154 1276 ntBASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 AC111152.3-201ENST00000569699 673 ntBASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
PCDHB3Q9Y5E6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHB3Q9Y5E6 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms