Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 AC027601.4-201ENST00000611259 610 ntBASIC21.07■□□□□ 0.96
DDX4Q9NQI0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 TNXA-203ENST00000507684 2038 ntBASIC21.07■□□□□ 0.96
DDX4Q9NQI0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX4Q9NQI0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AC132938.5-201ENST00000624980 1813 ntBASIC21.06■□□□□ 0.96
DDX4Q9NQI0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AC073621.1-201ENST00000392730 636 ntBASIC21.06■□□□□ 0.96
DDX4Q9NQI0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AC148477.5-201ENST00000625164 1645 ntBASIC21.06■□□□□ 0.96
DDX4Q9NQI0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 AL353593.2-201ENST00000602529 1483 ntBASIC21.06■□□□□ 0.96
DDX4Q9NQI0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
DDX4Q9NQI0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 BX842568.4-201ENST00000421222 227 ntBASIC21.05■□□□□ 0.96
DDX4Q9NQI0 MED15P5-201ENST00000423150 992 ntBASIC21.05■□□□□ 0.96
DDX4Q9NQI0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 AC103564.2-201ENST00000432853 1299 ntBASIC21.05■□□□□ 0.96
DDX4Q9NQI0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 BX323043.1-201ENST00000641006 1765 ntBASIC21.05■□□□□ 0.96
DDX4Q9NQI0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX4Q9NQI0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AC009947.1-201ENST00000444350 727 ntBASIC21.04■□□□□ 0.96
DDX4Q9NQI0 PRYP5-201ENST00000451909 266 ntBASIC21.04■□□□□ 0.96
DDX4Q9NQI0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 NMU-202ENST00000505262 693 ntTSL 3 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 AC019129.2-201ENST00000609837 1235 ntBASIC21.04■□□□□ 0.96
DDX4Q9NQI0 FAM197Y3-203ENST00000618346 717 ntBASIC21.04■□□□□ 0.96
DDX4Q9NQI0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX4Q9NQI0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms