Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX2Q9NPC8 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 DUX4L26-201ENST00000489078 1255 ntBASIC19.23■□□□□ 0.67
SIX2Q9NPC8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX2Q9NPC8 AL138688.1-201ENST00000624851 1594 ntBASIC19.23■□□□□ 0.67
SIX2Q9NPC8 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 HLA-J-201ENST00000462773 1622 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 AC020916.1-201ENST00000587762 1774 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 MTCL1P1-201ENST00000446207 792 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 AC092647.4-201ENST00000457211 535 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 AC116407.2-201ENST00000613639 860 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.22■□□□□ 0.67
SIX2Q9NPC8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SIX2Q9NPC8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 Z83836.1-201ENST00000624605 1642 ntBASIC19.21■□□□□ 0.67
SIX2Q9NPC8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.21■□□□□ 0.67
SIX2Q9NPC8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms