Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCSER1Q9C0I3 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 LINC00304-203ENST00000565008 1864 ntBASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 AC011498.5-201ENST00000592027 486 ntBASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 AC133963.1-201ENST00000504166 1679 ntBASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 REXO1L11P-201ENST00000620964 1927 ntBASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCSER1Q9C0I3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 AC096633.1-201ENST00000422446 749 ntBASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 TSPY22P-201ENST00000427496 604 ntBASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 FAM86EP-206ENST00000510506 987 ntBASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 AL353801.3-201ENST00000609898 542 ntBASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCSER1Q9C0I3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 AC005332.1-201ENST00000577698 1310 ntBASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCSER1Q9C0I3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCSER1Q9C0I3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCSER1Q9C0I3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms