Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX2Q99626 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.61■□□□□ 0.57
CDX2Q99626 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CDX2Q99626 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CDX2Q99626 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX2Q99626 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CDX2Q99626 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX2Q99626 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CDX2Q99626 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
CDX2Q99626 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.6■□□□□ 0.57
CDX2Q99626 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.6■□□□□ 0.57
CDX2Q99626 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.6■□□□□ 0.57
CDX2Q99626 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.6■□□□□ 0.57
CDX2Q99626 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.6■□□□□ 0.57
CDX2Q99626 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.6■□□□□ 0.57
CDX2Q99626 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX2Q99626 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 AL158211.3-201ENST00000607385 239 ntBASIC18.6■□□□□ 0.57
CDX2Q99626 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.6■□□□□ 0.57
CDX2Q99626 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX2Q99626 MYLKP1-201ENST00000509077 1580 ntBASIC18.59■□□□□ 0.57
CDX2Q99626 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CDX2Q99626 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX2Q99626 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CDX2Q99626 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 RBPMS2P1-201ENST00000437762 623 ntBASIC18.59■□□□□ 0.57
CDX2Q99626 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX2Q99626 AC079140.1-201ENST00000508039 487 ntBASIC18.59■□□□□ 0.57
CDX2Q99626 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.59■□□□□ 0.57
CDX2Q99626 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX2Q99626 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX2Q99626 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CDX2Q99626 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.58■□□□□ 0.57
CDX2Q99626 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CDX2Q99626 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.58■□□□□ 0.57
CDX2Q99626 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.58■□□□□ 0.57
CDX2Q99626 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX2Q99626 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.58■□□□□ 0.56
CDX2Q99626 RPS2P32-201ENST00000439199 892 ntBASIC18.58■□□□□ 0.56
CDX2Q99626 AC097493.3-201ENST00000509725 367 ntBASIC18.58■□□□□ 0.56
CDX2Q99626 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.58■□□□□ 0.56
CDX2Q99626 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.58■□□□□ 0.56
CDX2Q99626 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.58■□□□□ 0.56
CDX2Q99626 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 AC008677.1-201ENST00000519230 1561 ntBASIC18.58■□□□□ 0.56
CDX2Q99626 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX2Q99626 SIRPAP1-201ENST00000448467 1770 ntBASIC18.58■□□□□ 0.56
CDX2Q99626 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDX2Q99626 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX2Q99626 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.57■□□□□ 0.56
CDX2Q99626 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDX2Q99626 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.57■□□□□ 0.56
CDX2Q99626 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.57■□□□□ 0.56
CDX2Q99626 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms