Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.15■□□□□ 0.02
SPG11Q96JI7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SPG11Q96JI7 AC138761.1-201ENST00000584393 385 ntBASIC15.15■□□□□ 0.02
SPG11Q96JI7 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 AP000867.4-201ENST00000641616 219 ntBASIC15.15■□□□□ 0.02
SPG11Q96JI7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.15■□□□□ 0.02
SPG11Q96JI7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC064836.3-201ENST00000607928 673 ntBASIC15.14■□□□□ 0.01
SPG11Q96JI7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AF228730.6-201ENST00000641497 218 ntBASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC084121.3-201ENST00000641716 218 ntBASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC105233.6-201ENST00000642093 218 ntBASIC15.14■□□□□ 0.01
SPG11Q96JI7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SPG11Q96JI7 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.14■□□□□ 0.01
SPG11Q96JI7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SPG11Q96JI7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.13■□□□□ 0.01
SPG11Q96JI7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms