Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 KRT18P27-201ENST00000427733 1299 ntBASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 AC122714.2-201ENST00000502787 707 ntBASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.5■□□□□ 0.55
NPAS3Q8IXF0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 DNAJB3-201ENST00000446806 729 ntBASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AD001527.2-201ENST00000622994 785 ntBASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 AC004817.3-201ENST00000602957 2129 ntBASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
NPAS3Q8IXF0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 KRT8P47-201ENST00000604727 1398 ntBASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 AC112482.1-201ENST00000492080 688 ntBASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 AC006557.2-201ENST00000592985 1240 ntBASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 MIR1199-201ENST00000621445 119 ntBASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPAS3Q8IXF0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 AC004832.2-201ENST00000426397 482 ntBASIC18.47■□□□□ 0.55
NPAS3Q8IXF0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms