Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 FAM197Y8-203ENST00000450145 560 ntBASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC60Q8IWA6 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 HLA-A-201ENST00000376802 1334 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 RNA5SP419-201ENST00000515908 135 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 AL662844.1-201ENST00000546340 181 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 AC148477.8-201ENST00000624298 468 ntBASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC60Q8IWA6 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC60Q8IWA6 KRT18P67-201ENST00000432816 1264 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms