Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CICP14-201ENST00000629111 2732 ntBASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AL355312.1-201ENST00000407115 2176 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AC133963.1-201ENST00000504166 1679 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AC087386.2-201ENST00000623212 4637 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 PGM5P4-201ENST00000421970 445 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AL162393.1-201ENST00000437852 946 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AC008175.2-201ENST00000612840 297 ntBASIC11.18□□□□□ -0.62
LINC00643Q86TS7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
LINC00643Q86TS7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 AP005435.1-201ENST00000529293 1178 ntBASIC11.17□□□□□ -0.62
LINC00643Q86TS7 EEF1DP3-203ENST00000566025 782 ntBASIC11.17□□□□□ -0.62
LINC00643Q86TS7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC11.17□□□□□ -0.62
LINC00643Q86TS7 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms