Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
RC3H1Q5TC82 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
RC3H1Q5TC82 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.45■■□□□ 1.19
RC3H1Q5TC82 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 MIR770-201ENST00000390219 98 ntBASIC22.45■■□□□ 1.18
RC3H1Q5TC82 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 ACTG1P14-201ENST00000446382 1122 ntBASIC22.45■■□□□ 1.18
RC3H1Q5TC82 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 AC010507.1-201ENST00000633895 436 ntBASIC22.45■■□□□ 1.18
RC3H1Q5TC82 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
RC3H1Q5TC82 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 KRT19P2-202ENST00000557173 1012 ntBASIC22.44■■□□□ 1.18
RC3H1Q5TC82 OR7E47P-204ENST00000575924 449 ntBASIC22.44■■□□□ 1.18
RC3H1Q5TC82 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RC3H1Q5TC82 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 AP000344.2-201ENST00000512987 629 ntBASIC22.43■■□□□ 1.18
RC3H1Q5TC82 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 GGTLC5P-201ENST00000617623 998 ntBASIC22.43■■□□□ 1.18
RC3H1Q5TC82 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 AC018445.3-201ENST00000624177 1945 ntBASIC22.43■■□□□ 1.18
RC3H1Q5TC82 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RC3H1Q5TC82 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 AP002414.1-201ENST00000391405 1147 ntBASIC22.42■■□□□ 1.18
RC3H1Q5TC82 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
RC3H1Q5TC82 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms