Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SLC25A6P4-201ENST00000586535 553 ntBASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC144BQ3MJ40 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 AL499627.1-201ENST00000569373 2188 ntBASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 AC106795.1-205ENST00000512851 1056 ntBASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 AL121912.1-201ENST00000603683 238 ntBASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC144BQ3MJ40 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 AL022342.1-201ENST00000400363 863 ntBASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 AP005901.3-202ENST00000581653 237 ntBASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 AL353692.3-201ENST00000407031 1396 ntBASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCDC144BQ3MJ40 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 MRPL3P1-201ENST00000400109 1033 ntBASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC144BQ3MJ40 AC134043.2-201ENST00000624206 2238 ntBASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms