Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHD9Q3L8U1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 HLA-V-201ENST00000429037 534 ntBASIC18.87■□□□□ 0.61
CHD9Q3L8U1 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AC069262.1-201ENST00000539058 672 ntBASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AC025678.2-201ENST00000562061 970 ntBASIC18.87■□□□□ 0.61
CHD9Q3L8U1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AL121761.2-201ENST00000598007 1648 ntBASIC18.87■□□□□ 0.61
CHD9Q3L8U1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHD9Q3L8U1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHD9Q3L8U1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 ESPNP-201ENST00000270691 2015 ntBASIC18.85■□□□□ 0.61
CHD9Q3L8U1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 FAM58DP-201ENST00000428076 619 ntBASIC18.85■□□□□ 0.61
CHD9Q3L8U1 AC073592.5-201ENST00000624854 528 ntBASIC18.85■□□□□ 0.61
CHD9Q3L8U1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHD9Q3L8U1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 DUX4L17-201ENST00000557360 1267 ntBASIC18.84■□□□□ 0.61
CHD9Q3L8U1 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHD9Q3L8U1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms