Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 AC112907.2-201ENST00000448639 330 ntBASIC18.69■□□□□ 0.58
CDH6P55285 AC092647.4-201ENST00000457211 535 ntBASIC18.69■□□□□ 0.58
CDH6P55285 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 KRT18P21-201ENST00000515767 1272 ntBASIC18.69■□□□□ 0.58
CDH6P55285 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.69■□□□□ 0.58
CDH6P55285 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.69■□□□□ 0.58
CDH6P55285 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
CDH6P55285 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH6P55285 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CDH6P55285 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH6P55285 LINC00896-202ENST00000609602 2128 ntBASIC18.68■□□□□ 0.58
CDH6P55285 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CDH6P55285 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH6P55285 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH6P55285 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH6P55285 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 AC063952.2-201ENST00000498792 1227 ntBASIC18.68■□□□□ 0.58
CDH6P55285 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH6P55285 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 AC004263.2-201ENST00000617183 678 ntBASIC18.68■□□□□ 0.58
CDH6P55285 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDH6P55285 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH6P55285 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CDH6P55285 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH6P55285 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CDH6P55285 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDH6P55285 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 HBZP1-201ENST00000354915 429 ntBASIC18.67■□□□□ 0.58
CDH6P55285 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH6P55285 FAM210CP-201ENST00000445714 574 ntBASIC18.67■□□□□ 0.58
CDH6P55285 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.67■□□□□ 0.58
CDH6P55285 DUX4L26-201ENST00000489078 1255 ntBASIC18.67■□□□□ 0.58
CDH6P55285 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 ZNF444P1-201ENST00000559497 298 ntBASIC18.67■□□□□ 0.58
CDH6P55285 LINC01238-205ENST00000567549 1107 ntBASIC18.67■□□□□ 0.58
CDH6P55285 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.67■□□□□ 0.58
CDH6P55285 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDH6P55285 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH6P55285 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH6P55285 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH6P55285 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH6P55285 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH6P55285 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH6P55285 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH6P55285 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH6P55285 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms