Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
EPHB3P54753 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
EPHB3P54753 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
EPHB3P54753 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 AC010460.3-201ENST00000511359 1579 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
EPHB3P54753 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
EPHB3P54753 HLA-J-201ENST00000462773 1622 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
EPHB3P54753 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.68■□□□□ 0.58
EPHB3P54753 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.68■□□□□ 0.58
EPHB3P54753 KRT18P58-201ENST00000527480 1120 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 AC106730.1-201ENST00000566722 1090 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.68■□□□□ 0.58
EPHB3P54753 AL671883.3-201ENST00000603274 991 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.68■□□□□ 0.58
EPHB3P54753 AC117500.6-201ENST00000624871 588 ntBASIC18.68■□□□□ 0.58
EPHB3P54753 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.68■□□□□ 0.58
EPHB3P54753 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.68■□□□□ 0.58
EPHB3P54753 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
EPHB3P54753 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
EPHB3P54753 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
EPHB3P54753 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
EPHB3P54753 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.67■□□□□ 0.58
EPHB3P54753 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.67■□□□□ 0.58
EPHB3P54753 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.67■□□□□ 0.58
EPHB3P54753 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
EPHB3P54753 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
EPHB3P54753 AC103564.2-201ENST00000432853 1299 ntBASIC18.67■□□□□ 0.58
EPHB3P54753 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.67■□□□□ 0.58
EPHB3P54753 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
EPHB3P54753 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
EPHB3P54753 MTDHP4-201ENST00000600287 670 ntBASIC18.67■□□□□ 0.58
EPHB3P54753 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.67■□□□□ 0.58
EPHB3P54753 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
EPHB3P54753 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
EPHB3P54753 ZNF259P1-201ENST00000407656 1365 ntBASIC18.67■□□□□ 0.58
EPHB3P54753 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
EPHB3P54753 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
EPHB3P54753 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 AC025062.2-201ENST00000605477 670 ntBASIC18.66■□□□□ 0.58
EPHB3P54753 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.66■□□□□ 0.58
EPHB3P54753 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 WIZP1-201ENST00000531444 2299 ntBASIC18.66■□□□□ 0.58
EPHB3P54753 AL096828.2-201ENST00000567259 1965 ntBASIC18.66■□□□□ 0.58
EPHB3P54753 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
EPHB3P54753 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
EPHB3P54753 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms