Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC24.68■■□□□ 1.54
MSH6P52701 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC24.67■■□□□ 1.54
MSH6P52701 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC24.67■■□□□ 1.54
MSH6P52701 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
MSH6P52701 AC067863.1-201ENST00000494933 530 ntBASIC24.67■■□□□ 1.54
MSH6P52701 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC24.67■■□□□ 1.54
MSH6P52701 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC24.67■■□□□ 1.54
MSH6P52701 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC24.67■■□□□ 1.54
MSH6P52701 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
MSH6P52701 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC24.67■■□□□ 1.54
MSH6P52701 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC24.67■■□□□ 1.54
MSH6P52701 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
MSH6P52701 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 AC007274.1-201ENST00000439805 662 ntBASIC24.67■■□□□ 1.54
MSH6P52701 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC24.67■■□□□ 1.54
MSH6P52701 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC24.67■■□□□ 1.54
MSH6P52701 AC023141.13-201ENST00000604991 943 ntBASIC24.67■■□□□ 1.54
MSH6P52701 AC007064.4-201ENST00000637740 555 ntBASIC24.67■■□□□ 1.54
MSH6P52701 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH6P52701 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC24.66■■□□□ 1.54
MSH6P52701 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC24.66■■□□□ 1.54
MSH6P52701 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
MSH6P52701 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC24.66■■□□□ 1.54
MSH6P52701 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH6P52701 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC24.66■■□□□ 1.54
MSH6P52701 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC24.66■■□□□ 1.54
MSH6P52701 S100A2-206ENST00000497140 697 ntTSL 2 BASIC24.66■■□□□ 1.54
MSH6P52701 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC24.66■■□□□ 1.54
MSH6P52701 TERF1P3-201ENST00000505638 1227 ntBASIC24.66■■□□□ 1.54
MSH6P52701 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC24.66■■□□□ 1.54
MSH6P52701 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC24.66■■□□□ 1.54
MSH6P52701 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC24.66■■□□□ 1.54
MSH6P52701 AC068137.2-201ENST00000605408 478 ntBASIC24.66■■□□□ 1.54
MSH6P52701 REXO1L3P-201ENST00000622202 1288 ntBASIC24.66■■□□□ 1.54
MSH6P52701 AL353593.2-201ENST00000602529 1483 ntBASIC24.66■■□□□ 1.54
MSH6P52701 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
MSH6P52701 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
MSH6P52701 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
MSH6P52701 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
MSH6P52701 AL121761.2-201ENST00000598007 1648 ntBASIC24.65■■□□□ 1.54
MSH6P52701 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC24.65■■□□□ 1.54
MSH6P52701 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC24.65■■□□□ 1.54
MSH6P52701 OR7E47P-204ENST00000575924 449 ntBASIC24.65■■□□□ 1.54
MSH6P52701 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC24.65■■□□□ 1.54
MSH6P52701 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
MSH6P52701 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.65■■□□□ 1.54
MSH6P52701 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH6P52701 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH6P52701 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.64■■□□□ 1.54
MSH6P52701 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH6P52701 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH6P52701 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.64■■□□□ 1.54
MSH6P52701 GID4-202ENST00000376345 1391 ntTSL 3 BASIC24.64■■□□□ 1.54
MSH6P52701 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH6P52701 SNAI3-AS1-205ENST00000568633 2096 ntBASIC24.64■■□□□ 1.54
MSH6P52701 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC24.64■■□□□ 1.54
MSH6P52701 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
MSH6P52701 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
MSH6P52701 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
MSH6P52701 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
MSH6P52701 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
MSH6P52701 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC24.64■■□□□ 1.53
MSH6P52701 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.53
MSH6P52701 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC24.64■■□□□ 1.53
MSH6P52701 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC24.64■■□□□ 1.53
MSH6P52701 YTHDF3-AS1-201ENST00000603538 718 ntBASIC24.64■■□□□ 1.53
MSH6P52701 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
MSH6P52701 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms