Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SOX3P41225 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SOX3P41225 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX3P41225 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX3P41225 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SOX3P41225 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 AC009102.3-201ENST00000623118 1491 ntBASIC16.9■□□□□ 0.3
SOX3P41225 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SOX3P41225 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SOX3P41225 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX3P41225 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.89■□□□□ 0.3
SOX3P41225 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SOX3P41225 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SOX3P41225 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX3P41225 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX3P41225 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 RNF126P1-202ENST00000569893 925 ntBASIC16.89■□□□□ 0.29
SOX3P41225 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX3P41225 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 AC134043.2-201ENST00000624206 2238 ntBASIC16.89■□□□□ 0.29
SOX3P41225 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX3P41225 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX3P41225 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.89■□□□□ 0.29
SOX3P41225 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX3P41225 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX3P41225 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
SOX3P41225 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX3P41225 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 KRT18P48-201ENST00000434763 852 ntBASIC16.88■□□□□ 0.29
SOX3P41225 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX3P41225 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 AP003733.1-201ENST00000491725 852 ntBASIC16.88■□□□□ 0.29
SOX3P41225 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX3P41225 AC024563.2-201ENST00000603282 481 ntBASIC16.88■□□□□ 0.29
SOX3P41225 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX3P41225 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.88■□□□□ 0.29
SOX3P41225 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX3P41225 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX3P41225 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.87■□□□□ 0.29
SOX3P41225 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
SOX3P41225 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SOX3P41225 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SOX3P41225 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SOX3P41225 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX3P41225 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
SOX3P41225 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms