Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HOXD3P31249 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC13.88□□□□□ -0.19
HOXD3P31249 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC13.88□□□□□ -0.19
HOXD3P31249 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
HOXD3P31249 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HOXD3P31249 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC13.88□□□□□ -0.19
HOXD3P31249 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HOXD3P31249 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
HOXD3P31249 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
HOXD3P31249 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
HOXD3P31249 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 VENTXP7-201ENST00000475503 772 ntBASIC13.87□□□□□ -0.19
HOXD3P31249 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.87□□□□□ -0.19
HOXD3P31249 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 AC120114.3-201ENST00000611923 658 ntBASIC13.87□□□□□ -0.19
HOXD3P31249 AC023511.2-201ENST00000618803 211 ntBASIC13.87□□□□□ -0.19
HOXD3P31249 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.87□□□□□ -0.19
HOXD3P31249 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC13.87□□□□□ -0.19
HOXD3P31249 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXD3P31249 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
HOXD3P31249 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXD3P31249 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
HOXD3P31249 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 NSUN5P1-202ENST00000421140 1535 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 NSUN5P2-203ENST00000457352 1529 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HOXD3P31249 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD3P31249 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXD3P31249 MINOS1P3-201ENST00000457048 203 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 AL662844.1-201ENST00000546340 181 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 GPALPP1-207ENST00000611650 899 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 AC009154.2-201ENST00000621177 724 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD3P31249 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD3P31249 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 AC009113.1-201ENST00000570267 2443 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXD3P31249 AC135776.1-201ENST00000319817 2481 ntBASIC13.86□□□□□ -0.19
HOXD3P31249 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXD3P31249 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms