Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGA1P17096 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGA1P17096 RPL13AP23-201ENST00000480739 586 ntBASIC18.54■□□□□ 0.56
HMGA1P17096 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 IGHV3-22-201ENST00000520721 359 ntBASIC18.54■□□□□ 0.56
HMGA1P17096 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGA1P17096 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 AL049757.1-201ENST00000616842 1596 ntBASIC18.54■□□□□ 0.56
HMGA1P17096 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
HMGA1P17096 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGA1P17096 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGA1P17096 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
HMGA1P17096 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGA1P17096 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGA1P17096 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGA1P17096 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGA1P17096 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGA1P17096 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGA1P17096 PMS2P1-201ENST00000431037 1228 ntBASIC18.53■□□□□ 0.56
HMGA1P17096 BX005266.1-201ENST00000473402 457 ntBASIC18.53■□□□□ 0.56
HMGA1P17096 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGA1P17096 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.53■□□□□ 0.56
HMGA1P17096 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGA1P17096 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGA1P17096 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGA1P17096 AC107918.4-202ENST00000641623 219 ntBASIC18.53■□□□□ 0.56
HMGA1P17096 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGA1P17096 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGA1P17096 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 AL353593.2-201ENST00000602529 1483 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HMGA1P17096 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 AP000997.3-201ENST00000623333 2250 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGA1P17096 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 AC004817.3-201ENST00000602957 2129 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 SIGLEC16-201ENST00000599858 1437 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HMGA1P17096 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGA1P17096 SPDYE21P-201ENST00000413323 827 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGA1P17096 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGA1P17096 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGA1P17096 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HMGA1P17096 AC023511.2-201ENST00000618803 211 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 AC008735.5-201ENST00000623544 497 ntBASIC18.52■□□□□ 0.56
HMGA1P17096 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGA1P17096 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGA1P17096 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGA1P17096 HLA-J-201ENST00000462773 1622 ntBASIC18.52■□□□□ 0.55
HMGA1P17096 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.52■□□□□ 0.55
HMGA1P17096 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.52■□□□□ 0.55
HMGA1P17096 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
HMGA1P17096 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGA1P17096 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms