Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 AC005332.7-201ENST00000614046 2005 ntBASIC19.71■□□□□ 0.75
COL6A1P12109 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL6A1P12109 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 AFG3L1P-217ENST00000557444 2447 ntBASIC19.71■□□□□ 0.75
COL6A1P12109 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.71■□□□□ 0.75
COL6A1P12109 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 PAWRP1-201ENST00000451083 565 ntBASIC19.71■□□□□ 0.75
COL6A1P12109 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.71■□□□□ 0.75
COL6A1P12109 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.71■□□□□ 0.75
COL6A1P12109 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 AC138761.1-201ENST00000584393 385 ntBASIC19.71■□□□□ 0.75
COL6A1P12109 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 AC073592.5-201ENST00000624854 528 ntBASIC19.71■□□□□ 0.75
COL6A1P12109 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A1P12109 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A1P12109 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL6A1P12109 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A1P12109 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.7■□□□□ 0.74
COL6A1P12109 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.7■□□□□ 0.74
COL6A1P12109 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A1P12109 AC004877.2-201ENST00000623941 599 ntBASIC19.7■□□□□ 0.74
COL6A1P12109 AL513210.1-201ENST00000629608 234 ntBASIC19.7■□□□□ 0.74
COL6A1P12109 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
COL6A1P12109 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.7■□□□□ 0.74
COL6A1P12109 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A1P12109 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL6A1P12109 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A1P12109 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL6A1P12109 AC092474.2-201ENST00000424288 719 ntBASIC19.69■□□□□ 0.74
COL6A1P12109 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
COL6A1P12109 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.69■□□□□ 0.74
COL6A1P12109 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A1P12109 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A1P12109 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.69■□□□□ 0.74
COL6A1P12109 AC010507.1-201ENST00000633895 436 ntBASIC19.69■□□□□ 0.74
COL6A1P12109 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A1P12109 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL6A1P12109 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A1P12109 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL6A1P12109 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL6A1P12109 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A1P12109 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A1P12109 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms