Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.4■□□□□ 0.54
TOP3BO95985 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TOP3BO95985 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.4■□□□□ 0.54
TOP3BO95985 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.4■□□□□ 0.54
TOP3BO95985 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.4■□□□□ 0.54
TOP3BO95985 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.4■□□□□ 0.54
TOP3BO95985 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TOP3BO95985 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.4■□□□□ 0.54
TOP3BO95985 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.4■□□□□ 0.54
TOP3BO95985 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TOP3BO95985 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TOP3BO95985 AC138028.4-201ENST00000564984 1845 ntBASIC18.39■□□□□ 0.54
TOP3BO95985 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TOP3BO95985 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.39■□□□□ 0.54
TOP3BO95985 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TOP3BO95985 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TOP3BO95985 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.39■□□□□ 0.53
TOP3BO95985 RASA4DP-201ENST00000460726 1199 ntBASIC18.39■□□□□ 0.53
TOP3BO95985 AC092183.1-201ENST00000469884 875 ntBASIC18.39■□□□□ 0.53
TOP3BO95985 FOSL1P1-201ENST00000511041 816 ntBASIC18.39■□□□□ 0.53
TOP3BO95985 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.39■□□□□ 0.53
TOP3BO95985 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TOP3BO95985 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.39■□□□□ 0.53
TOP3BO95985 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TOP3BO95985 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TOP3BO95985 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
TOP3BO95985 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.38■□□□□ 0.53
TOP3BO95985 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.38■□□□□ 0.53
TOP3BO95985 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.38■□□□□ 0.53
TOP3BO95985 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.38■□□□□ 0.53
TOP3BO95985 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.38■□□□□ 0.53
TOP3BO95985 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TOP3BO95985 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 AF228730.7-201ENST00000641842 219 ntBASIC18.38■□□□□ 0.53
TOP3BO95985 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 AC139713.2-201ENST00000641328 2723 ntBASIC18.38■□□□□ 0.53
TOP3BO95985 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TOP3BO95985 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.37■□□□□ 0.53
TOP3BO95985 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.37■□□□□ 0.53
TOP3BO95985 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.37■□□□□ 0.53
TOP3BO95985 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.37■□□□□ 0.53
TOP3BO95985 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TOP3BO95985 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms