Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
SHOX2O60902 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 C1QL1P1-201ENST00000568105 661 ntBASIC17.96■□□□□ 0.47
SHOX2O60902 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.96■□□□□ 0.47
SHOX2O60902 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.96■□□□□ 0.47
SHOX2O60902 REXO1L11P-201ENST00000620964 1927 ntBASIC17.96■□□□□ 0.47
SHOX2O60902 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.46
SHOX2O60902 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SHOX2O60902 AC092171.3-201ENST00000610122 2651 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 HYMAI-201ENST00000635591 3347 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SHOX2O60902 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 MIR663A-201ENST00000385250 93 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.95■□□□□ 0.46
SHOX2O60902 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 AF201337.1-201ENST00000520239 748 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.95■□□□□ 0.46
SHOX2O60902 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.95■□□□□ 0.46
SHOX2O60902 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.95■□□□□ 0.46
SHOX2O60902 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SHOX2O60902 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 RNF216P1-203ENST00000404404 2427 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
SHOX2O60902 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.95■□□□□ 0.46
SHOX2O60902 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 GPAT2P1-201ENST00000444924 1672 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.95■□□□□ 0.46
SHOX2O60902 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SHOX2O60902 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHOX2O60902 AC009102.3-201ENST00000623118 1491 ntBASIC17.95■□□□□ 0.46
SHOX2O60902 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.94■□□□□ 0.46
SHOX2O60902 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 MIR564-202ENST00000385049 94 ntBASIC17.94■□□□□ 0.46
SHOX2O60902 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 CDCA4P2-201ENST00000441182 718 ntBASIC17.94■□□□□ 0.46
SHOX2O60902 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SHOX2O60902 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 AC016396.2-201ENST00000562575 1417 ntBASIC17.94■□□□□ 0.46
SHOX2O60902 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
SHOX2O60902 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.94■□□□□ 0.46
SHOX2O60902 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 AL136379.1-201ENST00000623471 2642 ntBASIC17.94■□□□□ 0.46
SHOX2O60902 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SHOX2O60902 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.94■□□□□ 0.46
SHOX2O60902 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SHOX2O60902 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms