Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AP000347.1-202ENST00000435868 847 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AL121912.1-201ENST00000603683 238 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AC124864.1-201ENST00000623408 392 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AL353692.3-201ENST00000407031 1396 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.47■□□□□ 0.39
PCDHGA3Q9Y5H0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 KRT18P41-201ENST00000518924 1277 ntBASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHGA3Q9Y5H0 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDHGA3Q9Y5H0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
PCDHGA3Q9Y5H0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.38
PCDHGA3Q9Y5H0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 Z98044.1-201ENST00000632503 1764 ntBASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 KRT16P4-201ENST00000453883 522 ntBASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 SLC25A6P4-201ENST00000586535 553 ntBASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHGA3Q9Y5H0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms