Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 AC138028.4-201ENST00000564984 1845 ntBASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.39■□□□□ 0.37
CUEDC1Q9NWM3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CUEDC1Q9NWM3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ATP5G2P1-201ENST00000433580 426 ntBASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 NOC2LP1-202ENST00000452600 2235 ntBASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.37■□□□□ 0.37
CUEDC1Q9NWM3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.36■□□□□ 0.37
CUEDC1Q9NWM3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms