Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC005332.3-201ENST00000589904 676 ntBASIC19.92■□□□□ 0.78
HPS3Q969F9 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.92■□□□□ 0.78
HPS3Q969F9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.92■□□□□ 0.78
HPS3Q969F9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.92■□□□□ 0.78
HPS3Q969F9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.92■□□□□ 0.78
HPS3Q969F9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.92■□□□□ 0.78
HPS3Q969F9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.92■□□□□ 0.78
HPS3Q969F9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HPS3Q969F9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HPS3Q969F9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.91■□□□□ 0.78
HPS3Q969F9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.91■□□□□ 0.78
HPS3Q969F9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HPS3Q969F9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
HPS3Q969F9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.91■□□□□ 0.78
HPS3Q969F9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.91■□□□□ 0.78
HPS3Q969F9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.91■□□□□ 0.78
HPS3Q969F9 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.91■□□□□ 0.78
HPS3Q969F9 NTF6B-201ENST00000591913 560 ntBASIC19.91■□□□□ 0.78
HPS3Q969F9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HPS3Q969F9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.91■□□□□ 0.78
HPS3Q969F9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 KRT8P47-201ENST00000604727 1398 ntBASIC19.91■□□□□ 0.78
HPS3Q969F9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 Z83836.1-201ENST00000624605 1642 ntBASIC19.91■□□□□ 0.78
HPS3Q969F9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HPS3Q969F9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.9■□□□□ 0.78
HPS3Q969F9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.9■□□□□ 0.78
HPS3Q969F9 AL049597.2-201ENST00000565575 961 ntBASIC19.9■□□□□ 0.78
HPS3Q969F9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.9■□□□□ 0.78
HPS3Q969F9 AC008687.5-201ENST00000593746 558 ntBASIC19.9■□□□□ 0.78
HPS3Q969F9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.9■□□□□ 0.78
HPS3Q969F9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.9■□□□□ 0.78
HPS3Q969F9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.9■□□□□ 0.78
HPS3Q969F9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
HPS3Q969F9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HPS3Q969F9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.9■□□□□ 0.78
HPS3Q969F9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.9■□□□□ 0.78
HPS3Q969F9 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HPS3Q969F9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.89■□□□□ 0.77
HPS3Q969F9 AL031133.1-201ENST00000406807 723 ntBASIC19.89■□□□□ 0.77
HPS3Q969F9 AL353692.3-201ENST00000407031 1396 ntBASIC19.89■□□□□ 0.77
HPS3Q969F9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.89■□□□□ 0.77
HPS3Q969F9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.89■□□□□ 0.77
HPS3Q969F9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.89■□□□□ 0.77
HPS3Q969F9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.89■□□□□ 0.77
HPS3Q969F9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.89■□□□□ 0.77
HPS3Q969F9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 AL390719.2-201ENST00000606993 987 ntBASIC19.89■□□□□ 0.77
HPS3Q969F9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.89■□□□□ 0.77
HPS3Q969F9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.89■□□□□ 0.77
HPS3Q969F9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HPS3Q969F9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms