Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLHC1Q8NHS4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CLHC1Q8NHS4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLHC1Q8NHS4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.27■□□□□ 0.35
CLHC1Q8NHS4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLHC1Q8NHS4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLHC1Q8NHS4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms