Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 AC126544.1-201ENST00000580842 1059 ntBASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 AC243732.1-201ENST00000612648 864 ntBASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 GRAMD4P4-201ENST00000613563 1115 ntBASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLRN3Q8NCR9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 AC092068.3-201ENST00000587894 2016 ntBASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN3Q8NCR9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN3Q8NCR9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CLRN3Q8NCR9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CLRN3Q8NCR9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.33□□□□□ -0.11
CLRN3Q8NCR9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
CLRN3Q8NCR9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AC091305.1-201ENST00000479476 895 ntBASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 AC105233.4-201ENST00000642045 216 ntBASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms