Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PHGDH-209ENST00000641074 1780 ntBASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 AC020763.4-201ENST00000623414 4170 ntBASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 AP001269.4-201ENST00000609611 512 ntBASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.98■□□□□ 0.47
HDDC3Q8N4P3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 RBM17P3-201ENST00000417687 1192 ntBASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDDC3Q8N4P3 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 FGFR3P6-201ENST00000457012 610 ntBASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 SCARNA2-201ENST00000458748 420 ntBASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.96■□□□□ 0.47
HDDC3Q8N4P3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HDDC3Q8N4P3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms