Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 VILL-207ENST00000465644 1857 ntTSL 5 BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 AC126335.2-201ENST00000623362 4637 ntBASIC11.21□□□□□ -0.62
LINC00643Q86TS7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.62
LINC00643Q86TS7 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 POU5F1P4-201ENST00000413175 1085 ntBASIC11.2□□□□□ -0.62
LINC00643Q86TS7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC11.2□□□□□ -0.62
LINC00643Q86TS7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AC138035.3-201ENST00000622706 2791 ntBASIC11.19□□□□□ -0.62
LINC00643Q86TS7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
LINC00643Q86TS7 BANP-203ENST00000393207 2438 ntTSL 2 BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms