Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LIG3P49916 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.9■□□□□ 0.62
LIG3P49916 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.9■□□□□ 0.62
LIG3P49916 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LIG3P49916 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.9■□□□□ 0.62
LIG3P49916 BX664615.1-201ENST00000443558 458 ntBASIC18.9■□□□□ 0.62
LIG3P49916 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 MIR4674-201ENST00000582457 87 ntBASIC18.9■□□□□ 0.62
LIG3P49916 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 AL118508.1-201ENST00000613502 2345 ntBASIC18.9■□□□□ 0.62
LIG3P49916 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.9■□□□□ 0.62
LIG3P49916 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 AC022211.2-201ENST00000585075 2527 ntBASIC18.9■□□□□ 0.62
LIG3P49916 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LIG3P49916 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIG3P49916 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIG3P49916 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIG3P49916 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.89■□□□□ 0.62
LIG3P49916 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
LIG3P49916 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LIG3P49916 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 ANO7L1-203ENST00000602586 1720 ntBASIC18.89■□□□□ 0.61
LIG3P49916 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.89■□□□□ 0.61
LIG3P49916 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
LIG3P49916 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 AL049597.2-201ENST00000565575 961 ntBASIC18.89■□□□□ 0.61
LIG3P49916 AC006011.2-201ENST00000621313 1158 ntBASIC18.89■□□□□ 0.61
LIG3P49916 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LIG3P49916 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 KRT8P3-201ENST00000519669 1449 ntBASIC18.89■□□□□ 0.61
LIG3P49916 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.89■□□□□ 0.61
LIG3P49916 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIG3P49916 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.89■□□□□ 0.61
LIG3P49916 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIG3P49916 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.88■□□□□ 0.61
LIG3P49916 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LIG3P49916 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIG3P49916 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.88■□□□□ 0.61
LIG3P49916 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.88■□□□□ 0.61
LIG3P49916 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 AC141257.4-201ENST00000634557 245 ntBASIC18.88■□□□□ 0.61
LIG3P49916 AC136944.6-201ENST00000634818 245 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms