Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RFX3P48380 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 AC092647.4-201ENST00000457211 535 ntBASIC16.92■□□□□ 0.3
RFX3P48380 AL359075.1-203ENST00000462729 1002 ntBASIC16.92■□□□□ 0.3
RFX3P48380 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.92■□□□□ 0.3
RFX3P48380 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
RFX3P48380 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.92■□□□□ 0.3
RFX3P48380 AC006011.2-201ENST00000621313 1158 ntBASIC16.92■□□□□ 0.3
RFX3P48380 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 AL162741.1-201ENST00000565563 1558 ntBASIC16.92■□□□□ 0.3
RFX3P48380 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
RFX3P48380 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.92■□□□□ 0.3
RFX3P48380 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
RFX3P48380 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.91■□□□□ 0.3
RFX3P48380 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.91■□□□□ 0.3
RFX3P48380 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.91■□□□□ 0.3
RFX3P48380 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RFX3P48380 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
RFX3P48380 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 RCN1P1-201ENST00000400413 996 ntBASIC16.91■□□□□ 0.3
RFX3P48380 TMPOP1-202ENST00000424642 1267 ntBASIC16.91■□□□□ 0.3
RFX3P48380 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.91■□□□□ 0.3
RFX3P48380 RASA4DP-201ENST00000460726 1199 ntBASIC16.91■□□□□ 0.3
RFX3P48380 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
RFX3P48380 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 MIR3180-4-201ENST00000582223 153 ntBASIC16.91■□□□□ 0.3
RFX3P48380 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.91■□□□□ 0.3
RFX3P48380 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 PHGDH-209ENST00000641074 1780 ntBASIC16.91■□□□□ 0.3
RFX3P48380 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 AL096828.2-201ENST00000567259 1965 ntBASIC16.91■□□□□ 0.3
RFX3P48380 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RFX3P48380 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
RFX3P48380 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RFX3P48380 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
RFX3P48380 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.9■□□□□ 0.3
RFX3P48380 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RFX3P48380 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.9■□□□□ 0.3
RFX3P48380 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.9■□□□□ 0.3
RFX3P48380 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
RFX3P48380 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.9■□□□□ 0.3
RFX3P48380 LINC01126-201ENST00000623515 1646 ntBASIC16.9■□□□□ 0.3
RFX3P48380 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.9■□□□□ 0.3
RFX3P48380 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.9■□□□□ 0.3
RFX3P48380 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.9■□□□□ 0.3
RFX3P48380 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.9■□□□□ 0.3
RFX3P48380 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.9■□□□□ 0.3
RFX3P48380 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RFX3P48380 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RFX3P48380 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.89■□□□□ 0.3
RFX3P48380 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms