Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.88■□□□□ 0.61
PDGFRAP16234 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PDGFRAP16234 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.88■□□□□ 0.61
PDGFRAP16234 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 AL645929.1-201ENST00000420084 975 ntBASIC18.88■□□□□ 0.61
PDGFRAP16234 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.88■□□□□ 0.61
PDGFRAP16234 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.88■□□□□ 0.61
PDGFRAP16234 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.88■□□□□ 0.61
PDGFRAP16234 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 KRT18P55-202ENST00000578578 1546 ntBASIC18.88■□□□□ 0.61
PDGFRAP16234 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.88■□□□□ 0.61
PDGFRAP16234 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.88■□□□□ 0.61
PDGFRAP16234 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PDGFRAP16234 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.88■□□□□ 0.61
PDGFRAP16234 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PDGFRAP16234 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PDGFRAP16234 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PDGFRAP16234 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PDGFRAP16234 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.87■□□□□ 0.61
PDGFRAP16234 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.87■□□□□ 0.61
PDGFRAP16234 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.87■□□□□ 0.61
PDGFRAP16234 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.87■□□□□ 0.61
PDGFRAP16234 GPR32P1-201ENST00000601788 811 ntBASIC18.87■□□□□ 0.61
PDGFRAP16234 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 AC022898.2-201ENST00000616822 1312 ntBASIC18.87■□□□□ 0.61
PDGFRAP16234 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.87■□□□□ 0.61
PDGFRAP16234 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PDGFRAP16234 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.86■□□□□ 0.61
PDGFRAP16234 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.86■□□□□ 0.61
PDGFRAP16234 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.86■□□□□ 0.61
PDGFRAP16234 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 AL353692.3-201ENST00000407031 1396 ntBASIC18.86■□□□□ 0.61
PDGFRAP16234 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.86■□□□□ 0.61
PDGFRAP16234 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.86■□□□□ 0.61
PDGFRAP16234 KRT18P65-201ENST00000439811 1286 ntBASIC18.86■□□□□ 0.61
PDGFRAP16234 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PDGFRAP16234 RNF126P1-202ENST00000569893 925 ntBASIC18.86■□□□□ 0.61
PDGFRAP16234 AC005332.3-201ENST00000589904 676 ntBASIC18.86■□□□□ 0.61
PDGFRAP16234 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.86■□□□□ 0.61
PDGFRAP16234 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 AC067852.2-201ENST00000590513 2313 ntBASIC18.86■□□□□ 0.61
PDGFRAP16234 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
PDGFRAP16234 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PDGFRAP16234 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.85■□□□□ 0.61
PDGFRAP16234 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.85■□□□□ 0.61
PDGFRAP16234 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PDGFRAP16234 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PDGFRAP16234 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.85■□□□□ 0.61
PDGFRAP16234 TSPY12P-201ENST00000421279 868 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms