Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A2P08572 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A2P08572 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL4A2P08572 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A2P08572 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A2P08572 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.97■□□□□ 0.47
COL4A2P08572 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.97■□□□□ 0.47
COL4A2P08572 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A2P08572 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A2P08572 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A2P08572 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A2P08572 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A2P08572 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.96■□□□□ 0.47
COL4A2P08572 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A2P08572 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A2P08572 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A2P08572 TSEN15P1-201ENST00000423257 515 ntBASIC17.96■□□□□ 0.47
COL4A2P08572 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A2P08572 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A2P08572 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL4A2P08572 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.96■□□□□ 0.47
COL4A2P08572 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A2P08572 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL4A2P08572 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.96■□□□□ 0.47
COL4A2P08572 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
COL4A2P08572 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A2P08572 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.96■□□□□ 0.46
COL4A2P08572 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A2P08572 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A2P08572 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 SPCS2P1-201ENST00000561636 679 ntBASIC17.95■□□□□ 0.46
COL4A2P08572 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.95■□□□□ 0.46
COL4A2P08572 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.95■□□□□ 0.46
COL4A2P08572 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
COL4A2P08572 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL4A2P08572 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.95■□□□□ 0.46
COL4A2P08572 KRT19P2-202ENST00000557173 1012 ntBASIC17.95■□□□□ 0.46
COL4A2P08572 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 AC004790.2-201ENST00000623588 572 ntBASIC17.95■□□□□ 0.46
COL4A2P08572 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.95■□□□□ 0.46
COL4A2P08572 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A2P08572 KRT18P28-201ENST00000453838 1332 ntBASIC17.94■□□□□ 0.46
COL4A2P08572 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
COL4A2P08572 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A2P08572 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A2P08572 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
COL4A2P08572 RHOQP3-201ENST00000437982 621 ntBASIC17.94■□□□□ 0.46
COL4A2P08572 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.94■□□□□ 0.46
COL4A2P08572 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.94■□□□□ 0.46
COL4A2P08572 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.94■□□□□ 0.46
COL4A2P08572 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.94■□□□□ 0.46
COL4A2P08572 AL031432.2-201ENST00000566714 459 ntBASIC17.94■□□□□ 0.46
COL4A2P08572 AL928711.1-201ENST00000570165 459 ntBASIC17.94■□□□□ 0.46
COL4A2P08572 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
COL4A2P08572 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL4A2P08572 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms