Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 AC141586.5-201ENST00000624546 2050 ntBASIC20.8■□□□□ 0.92
CTDNEP1O95476 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTDNEP1O95476 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.8■□□□□ 0.92
CTDNEP1O95476 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTDNEP1O95476 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CTDNEP1O95476 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 AC108860.2-201ENST00000562760 2183 ntBASIC20.78■□□□□ 0.92
CTDNEP1O95476 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 MTCL1P1-201ENST00000446207 792 ntBASIC20.78■□□□□ 0.92
CTDNEP1O95476 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTDNEP1O95476 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.78■□□□□ 0.92
CTDNEP1O95476 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 AC133963.1-201ENST00000504166 1679 ntBASIC20.77■□□□□ 0.92
CTDNEP1O95476 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.77■□□□□ 0.92
CTDNEP1O95476 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 AL031133.1-201ENST00000406807 723 ntBASIC20.77■□□□□ 0.92
CTDNEP1O95476 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.77■□□□□ 0.92
CTDNEP1O95476 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 FZD10-202ENST00000539839 3282 ntBASIC20.77■□□□□ 0.92
CTDNEP1O95476 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTDNEP1O95476 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CTDNEP1O95476 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTDNEP1O95476 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTDNEP1O95476 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTDNEP1O95476 SIRPAP1-201ENST00000448467 1770 ntBASIC20.77■□□□□ 0.91
CTDNEP1O95476 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CTDNEP1O95476 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.76■□□□□ 0.91
CTDNEP1O95476 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTDNEP1O95476 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms