Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1BO60663 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
LMX1BO60663 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
LMX1BO60663 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.82■□□□□ 0.12
LMX1BO60663 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.82■□□□□ 0.12
LMX1BO60663 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.82■□□□□ 0.12
LMX1BO60663 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.82■□□□□ 0.12
LMX1BO60663 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.82■□□□□ 0.12
LMX1BO60663 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 PP12613-201ENST00000424958 2230 ntBASIC15.82■□□□□ 0.12
LMX1BO60663 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LMX1BO60663 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LMX1BO60663 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.81■□□□□ 0.12
LMX1BO60663 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 AC026396.1-201ENST00000419388 421 ntBASIC15.81■□□□□ 0.12
LMX1BO60663 AC093010.1-201ENST00000473625 1624 ntBASIC15.81■□□□□ 0.12
LMX1BO60663 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.81■□□□□ 0.12
LMX1BO60663 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 VENTXP5-201ENST00000523979 775 ntBASIC15.81■□□□□ 0.12
LMX1BO60663 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC15.81■□□□□ 0.12
LMX1BO60663 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.81■□□□□ 0.12
LMX1BO60663 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.81■□□□□ 0.12
LMX1BO60663 HOXB1-202ENST00000577092 1414 ntBASIC15.81■□□□□ 0.12
LMX1BO60663 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
LMX1BO60663 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LMX1BO60663 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LMX1BO60663 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1BO60663 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1BO60663 AC006116.8-202ENST00000587620 1550 ntBASIC15.8■□□□□ 0.12
LMX1BO60663 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.8■□□□□ 0.12
LMX1BO60663 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LMX1BO60663 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.8■□□□□ 0.12
LMX1BO60663 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms