Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 PRORSD1P-202ENST00000563365 2154 ntBASIC15.92■□□□□ 0.14
SGCEO43556 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.92■□□□□ 0.14
SGCEO43556 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC15.92■□□□□ 0.14
SGCEO43556 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SGCEO43556 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 KRT18P57-201ENST00000443599 1254 ntBASIC15.92■□□□□ 0.14
SGCEO43556 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 YBX1P2-201ENST00000489612 999 ntBASIC15.92■□□□□ 0.14
SGCEO43556 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.92■□□□□ 0.14
SGCEO43556 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.92■□□□□ 0.14
SGCEO43556 AL441883.1-201ENST00000566170 1045 ntBASIC15.92■□□□□ 0.14
SGCEO43556 AC139887.4-201ENST00000607877 719 ntBASIC15.92■□□□□ 0.14
SGCEO43556 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
SGCEO43556 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
SGCEO43556 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
SGCEO43556 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 AC073508.3-201ENST00000619697 1419 ntBASIC15.92■□□□□ 0.14
SGCEO43556 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.92■□□□□ 0.14
SGCEO43556 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SGCEO43556 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SGCEO43556 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 AC093010.1-201ENST00000473625 1624 ntBASIC15.91■□□□□ 0.14
SGCEO43556 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SGCEO43556 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.91■□□□□ 0.14
SGCEO43556 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.91■□□□□ 0.14
SGCEO43556 FLJ13224-201ENST00000313737 1514 ntBASIC15.91■□□□□ 0.14
SGCEO43556 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SGCEO43556 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.91■□□□□ 0.14
SGCEO43556 RASA4DP-201ENST00000460726 1199 ntBASIC15.91■□□□□ 0.14
SGCEO43556 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
SGCEO43556 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
SGCEO43556 AC011558.1-201ENST00000623459 338 ntBASIC15.91■□□□□ 0.14
SGCEO43556 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SGCEO43556 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SGCEO43556 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SGCEO43556 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.9■□□□□ 0.14
SGCEO43556 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.9■□□□□ 0.14
SGCEO43556 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SGCEO43556 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.9■□□□□ 0.14
SGCEO43556 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.9■□□□□ 0.14
SGCEO43556 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.9■□□□□ 0.14
SGCEO43556 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
SGCEO43556 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.9■□□□□ 0.14
SGCEO43556 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SGCEO43556 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SGCEO43556 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
SGCEO43556 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SGCEO43556 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SGCEO43556 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms