Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 MKNK2P1-201ENST00000437526 628 ntBASIC30.92■■■□□ 2.54
CCDC88BA6NC98 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 OR7E47P-204ENST00000575924 449 ntBASIC30.92■■■□□ 2.54
CCDC88BA6NC98 AC004790.2-201ENST00000623588 572 ntBASIC30.92■■■□□ 2.54
CCDC88BA6NC98 AC073592.3-201ENST00000625118 1834 ntBASIC30.92■■■□□ 2.54
CCDC88BA6NC98 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC88BA6NC98 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 NKTR-203ENST00000442970 646 ntTSL 2 BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CCDC88BA6NC98 ELL2P1-201ENST00000413990 1906 ntBASIC30.91■■■□□ 2.54
CCDC88BA6NC98 CROCCP3-202ENST00000420820 1947 ntBASIC30.91■■■□□ 2.54
CCDC88BA6NC98 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 AC003669.1-201ENST00000334569 611 ntBASIC30.9■■■□□ 2.54
CCDC88BA6NC98 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 S100A2-206ENST00000497140 697 ntTSL 2 BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 MAL2-202ENST00000531508 892 ntTSL 3 BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 AC010654.1-201ENST00000615722 808 ntBASIC30.9■■■□□ 2.54
CCDC88BA6NC98 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC88BA6NC98 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 PDPK2P-202ENST00000562415 1191 ntBASIC30.89■■■□□ 2.54
CCDC88BA6NC98 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CCDC88BA6NC98 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC30.89■■■□□ 2.53
CCDC88BA6NC98 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 PUS1-205ENST00000535067 838 ntTSL 3 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC30.88■■■□□ 2.53
CCDC88BA6NC98 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 METTL26-205ENST00000397666 726 ntTSL 2 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC88BA6NC98 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms