Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC211476.1-201ENST00000503899 468 ntBASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC005593.1-201ENST00000624894 515 ntBASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 AC079776.2-201ENST00000641154 1609 ntBASIC17.25■□□□□ 0.35
PCDHGA1Q9Y5H4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AC022898.2-201ENST00000616822 1312 ntBASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.24■□□□□ 0.35
PCDHGA1Q9Y5H4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 KRT18P27-201ENST00000427733 1299 ntBASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 PRYP5-201ENST00000451909 266 ntBASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AC073592.4-201ENST00000623827 446 ntBASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PCDHGA1Q9Y5H4 AL032819.2-201ENST00000624543 2162 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms