Protein–RNA interactions for Protein: Q9UHP3

USP25, Ubiquitin carboxyl-terminal hydrolase 25, humanhuman

Predictions only

Length 1,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP25Q9UHP3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
USP25Q9UHP3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP25Q9UHP3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.65■□□□□ 0.9
USP25Q9UHP3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP25Q9UHP3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP25Q9UHP3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
USP25Q9UHP3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
USP25Q9UHP3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP25Q9UHP3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 TSPY14P-201ENST00000303979 915 ntBASIC20.63■□□□□ 0.89
USP25Q9UHP3 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.63■□□□□ 0.89
USP25Q9UHP3 AC104390.1-201ENST00000555663 520 ntBASIC20.63■□□□□ 0.89
USP25Q9UHP3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 PHGDH-209ENST00000641074 1780 ntBASIC20.63■□□□□ 0.89
USP25Q9UHP3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 AC006116.8-202ENST00000587620 1550 ntBASIC20.63■□□□□ 0.89
USP25Q9UHP3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.63■□□□□ 0.89
USP25Q9UHP3 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP25Q9UHP3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 AP001094.4-201ENST00000579008 2176 ntBASIC20.62■□□□□ 0.89
USP25Q9UHP3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 MIR1238-201ENST00000408483 83 ntBASIC20.62■□□□□ 0.89
USP25Q9UHP3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP25Q9UHP3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP25Q9UHP3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP25Q9UHP3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.61■□□□□ 0.89
USP25Q9UHP3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms