Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC139530.3-201ENST00000620344 690 ntBASIC21.15■□□□□ 0.98
DDX4Q9NQI0 AC073592.4-201ENST00000623827 446 ntBASIC21.15■□□□□ 0.98
DDX4Q9NQI0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.14■□□□□ 0.98
DDX4Q9NQI0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX4Q9NQI0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX4Q9NQI0 ZNF259P1-201ENST00000407656 1365 ntBASIC21.14■□□□□ 0.98
DDX4Q9NQI0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 RNA5SP415-201ENST00000517246 115 ntBASIC21.14■□□□□ 0.97
DDX4Q9NQI0 PGAM5P1-201ENST00000518923 814 ntBASIC21.14■□□□□ 0.97
DDX4Q9NQI0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX4Q9NQI0 AC135776.1-201ENST00000319817 2481 ntBASIC21.14■□□□□ 0.97
DDX4Q9NQI0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 SIRPAP1-201ENST00000448467 1770 ntBASIC21.13■□□□□ 0.97
DDX4Q9NQI0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 TERC-201ENST00000602385 541 ntBASIC21.13■□□□□ 0.97
DDX4Q9NQI0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 AC100803.2-201ENST00000562459 1963 ntBASIC21.13■□□□□ 0.97
DDX4Q9NQI0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
DDX4Q9NQI0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 PMS2P7-201ENST00000506558 1336 ntBASIC21.12■□□□□ 0.97
DDX4Q9NQI0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 COX5BP2-201ENST00000392354 334 ntBASIC21.12■□□□□ 0.97
DDX4Q9NQI0 KRT18P13-201ENST00000400056 1290 ntBASIC21.12■□□□□ 0.97
DDX4Q9NQI0 LBH-204ENST00000406087 559 ntTSL 4 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
DDX4Q9NQI0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX4Q9NQI0 AC105339.3-201ENST00000560043 636 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms