Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 AC132938.6-201ENST00000623828 1655 ntBASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRIM39Q9HCM9 AL096828.2-201ENST00000567259 1965 ntBASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 AC106820.2-201ENST00000563775 3264 ntBASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 AC011840.4-201ENST00000578471 627 ntBASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRIM39Q9HCM9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM39Q9HCM9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 MTCL1P1-201ENST00000446207 792 ntBASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 KRT18P56-201ENST00000507275 550 ntBASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 DUTP2-201ENST00000519164 463 ntBASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 AL353801.3-201ENST00000609898 542 ntBASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms