Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RPAP1Q9BWH6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RPAP1Q9BWH6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 NUS1P2-201ENST00000417358 873 ntBASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPAP1Q9BWH6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 PHGDH-209ENST00000641074 1780 ntBASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 BNIP3P18-201ENST00000593976 575 ntBASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 TP73-AS1-207ENST00000624167 988 ntBASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 GMCL1P1-201ENST00000463439 1581 ntBASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPAP1Q9BWH6 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.79■■□□□ 1.08
RPAP1Q9BWH6 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms